PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000903
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92614.7 Da    PI: 6.42
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-50982548PU_refplantGDBView CDS
gnl|UG|Pta#S34066899PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.2e-181876357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Pta000903 18 KYVRYTAEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
               5679*****************************************************97 PP

2START162.53e-511663742205
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  W +++ +++g++ + +++ s++++g a+ra+ +v  +++  v+e+l+d+  W ++++++++l + s+g  g+++l +++++
  Pta000903 166 IAEETLTEFLSKAKGNAVEWIQMPGMKPGPDAIGIVTISHGCTGVAARACSLVGIDPT-KVAEILKDRTSWLRDCRSVDVLTAFSTGngGTIELLYMQMY 264
                789*******************************************************.8888888888******************************* PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l++ Rdf+++Ry+  l++g++v++++S++ +q  p+    +++vRae+ pSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s+++ ++k 
  Pta000903 265 APTTLASaRDFWTLRYTSVLEDGSLVVCERSLSGTQGGPSmpaVQQFVRAEMQPSGYLIRPCEGGGSLIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKV 364
                ***************************************999889******************************************************* PP

                HHHHTXXXXX CS
      START 196 wvatlqrqce 205
                ++++l+++++
  Pta000903 365 TMSALRHLRQ 374
                *****99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6771377IPR001356Homeobox domain
SMARTSM003892.2E-151581IPR001356Homeobox domain
PfamPF000461.2E-151876IPR001356Homeobox domain
SuperFamilySSF466893.64E-161881IPR009057Homeodomain-like
CDDcd000865.61E-161878No hitNo description
Gene3DG3DSA:1.10.10.605.8E-182076IPR009057Homeodomain-like
CDDcd146861.53E-670109No hitNo description
PROSITE profilePS5084825.951156384IPR002913START domain
CDDcd088759.69E-81160376No hitNo description
SMARTSM002342.7E-36165375IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-23165370IPR023393START-like domain
SuperFamilySSF559611.79E-37165377No hitNo description
PfamPF018529.1E-49166374IPR002913START domain
SuperFamilySSF559614.51E-5405496No hitNo description
SuperFamilySSF559614.51E-5527606No hitNo description
PfamPF086701.2E-51701843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MAVTSGKEGK SSSMDQGKYV RYTAEQVEAL ERLYHDCPKP SSIRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL SAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ  120
QVAECLHSNY NTSCESVVTS VKHQQQNHLT PRDPPRDASP AGLLSIAEET LTEFLSKAKG  180
NAVEWIQMPG MKPGPDAIGI VTISHGCTGV AARACSLVGI DPTKVAEILK DRTSWLRDCR  240
SVDVLTAFST GNGGTIELLY MQMYAPTTLA SARDFWTLRY TSVLEDGSLV VCERSLSGTQ  300
GGPSMPAVQQ FVRAEMQPSG YLIRPCEGGG SLIHIVDHMD LEPWSVPEVL RPLYESSTVL  360
AQKVTMSALR HLRQIAQEVS SDVVLGWGRQ PAALRTFSQR LCKGFNEAVN GFTDDGWSLM  420
GNDGMEDVTI LVNSSPSKLF GQQFASSDGL PALGGGILCA KASMLLQNVP PALLVRFLRE  480
HRSEWADSNI DAYSAASWKA SPCTVPSSRI GGFGGGQVIL PLAHTVEHEE FLEVIKLENH  540
GLTQEEALLS RDMFLLQLCS GLDENAVGAC AELVFAPIDA SLADSSPLLP SGFRVIPLDS  600
GMDGSSPNRT LDLASSLEIG SAGARTSVDY GGNSGNLRSV LTIAFQFTFE NHLRENVASM  660
ARQYVRGVVA SVQRVAMALA PSRLGSHLGP RLPPGTPEAL TLARWVCQSY RFHLGVELLR  720
PNSEVNESLL KTLWHHSDAI MCCSLKSLPV FTFANQAGLD MLETTLVALQ DISLEKILDD  780
NGRKSFCSDI AQIMQQGYAY LPAGVCVSSM GRPASYDRAI AWKVLNDEEN PHCIAFMFMN  840
WSFV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.52670.0needle| root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853643.20.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLQ0Q4200.0Q0Q420_PINTA; Class III HD-Zip protein HDZ32
STRINGVIT_09s0002g03740.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]